Zebrafish Developmental Profile

DNA Microarray Data from Amacher (Berkeley), Farber (Carnegie Institution), and Ho (Thomas Jefferson) Labs

This web tool is described in detail in the following paper: Ming Ouyang, Aaron T. Garnett, Tina M. Han, Kotaro Hama, Amy Lee, Yun Deng, Nancy Lee, Hsing-Yin Liu, Sharon L. Amacher, Steven A. Farber, and Shiu-Ying Ho. Gene Expression Patterns (2007) A Web Based Resource Characterizing the Zebrafish Developmental Profile of over 16,000 transcripts. Please cite the paper if this web tool is useful to your research.

 

Node 0: High Expression at 18 Somites and 24 Hours

Node 1: High Expression at 4 and 5 Days

Node 2: Early Developmental Genes

Node 3: Genes on in All Time Points

Node 4: Genes on in All Time Points

Node 5: Genes Expressed Late in Development

Node 6: Genes Peaking in Late Development

Node 7: Genes Peaking in Early Development

Node 8: Genes Peaking at 48 Hours

Node 9: Genes with Highest Expression Early, but Moderate Expression Later


If you have a sequence and wish to know which probe on the microarray chip represents your sequence, please paste your DNA sequence in the following box, and we will find the accession number of the corresponding probe:

If you have a GenBank accession number and wish to examine the developmental profile of the gene, please enter the accession number here:

We can also do a BLAST search of a probe in the NCBI "nr" database.

What do you want to do?

Correspondence on microarray experiments:

Sharon Amacher (amacher @ berkeley . edu), Steven A Farber (farber @ ciwemb . edu), Shiu-Ying Ho (sho @ mail . jci . tju . edu)

Correspondence on data analysis:

Ming Ouyang (ming.ouyang @ louisville . edu)